- Department of Mathematics
- Algebra and Geometry
- Analysis and Applied Analysis
- Integrated Mathematics
- Department of Physics
- Fundamental Physics
- Solid State and Optical Physics
- Department of Chemistry
- Inorganic and Organic Chemistry
- Physical Chemistry
- Department of Earth Sciences
- Earth Environmental Science
- Physical Earth Science
- Department of Biological Science
- Biological Function
- Biological Regulation
- Shock Wave and Condensed Matter Research Center; Low Temperature Laboratory
- Center for Marine Environment Studies; Aitsu Marine Station
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